Plateforme de Microscopie de l’Institut de Microbiologie de la Méditerranée (IMM, FR 3479)

Publications-Remerciements

lundi 25 mars 2024 par Artemis Kosta

2024
Dessartine MM, Kosta A, Doan T, Cascales É, Côté J-P. Type 1 fimbriae-mediated collective protection against type 6 secretion system attacks. mBio. 2024 Mar 18:e0255323. doi : 10.1128/mbio.02553-23.

Bongiovanni TR, Latario CJ, Le Cras Y, Trus E, Robitaille S, Swartz K, Schmidtke D, Vincent M, Kosta A, Orth J, Stengel F, Pellarin R, Rocha EPC, Ross BD, Durand E. Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota. Nat Commun 15, 429 (2024). https://doi.org/10.1038/s41467-023-44426-1

2023

Pierro A, Tamburrini KC, Leguenno H, Gerbaud G, Etienne E, Guigliarelli B, Belle V, Zambelli B, Mileo E. In-cell investigation of the conformational landscape of the GTPase UreG by SDSL-EPR. iScience. 2023 Sep 9 ;26(10):107855. doi : 10.1016/j.isci.2023.107855. PMID : 37766968 ; PMCID : PMC10520941.

Kandolo O, Cherrak Y, Filella-Merce I, Le Guenno H, Kosta A, Espinosa L, Santucci P, Verthuy C, Lebrun R, Nilges M, Pellarin R, Durand E. Acinetobacter type VI secretion system comprises a non-canonical membrane complex. PLoS Pathog. 2023 Sep 28 ;19(9):e1011687. doi : 10.1371/journal.ppat.1011687. PMID : 37769028 ; PMCID : PMC10564176.

Bourigault Y, Dupont CA, Desjardins JB, Doan T, Bouteiller M, Le Guenno H, Chevalier S, Barbey C, Latour X, Cascales E, Merieau A. Pseudomonas fluorescens MFE01 delivers a putative type VI secretion amidase that confers biocontrol against the soft-rot pathogen Pectobacterium atrosepticum. Environ Microbiol. 2023 Aug 25. doi : 10.1111/1462-2920.16492. Epub ahead of print. PMID : 37622480.

Kubiak A, Pajewska-Szmyt M, Kotula M, Leśniewski B, Voronkina A, Rahimi P, Falahi S, Heimler K, Rogoll A, Vogt C, et al. Spongin as a Unique 3D Template for the Development of Functional Iron-Based Composites Using Biomimetic Approach In Vitro. Marine Drugs. 2023 ; 21(9):460.

Gil M, Ramil F, AgÍs JA. Hydroids (Cnidaria, Hydrozoa) from Mauritanian Coral Mounds. Zootaxa. 2020 Nov 16 ;4878(3):zootaxa.4878.3.2. doi : 10.11646/zootaxa.4878.3.2. PMID : 33311142.

[Chevrier DM, Juhin A, Menguy N, Bolzoni R, Soto-Rodriguez PED, Kojadinovic-Sirinelli M, Paterson GA, Belkhou R, Williams W, Skouri-Panet F, Kosta A, Le Guenno H, Pereiro E, Faivre D, Benzerara K, Monteil CL, Lefevre CT. Collective magnetotaxis of microbial holobionts is optimized by the three-dimensional organization and magnetic properties of ectosymbionts. Proc Natl Acad Sci U S A. 2023 Mar 7 ;120(10):e2216975120. doi : 10.1073/pnas.2216975120. Epub 2023 Feb 27. PMID : 36848579.

[Jiang Y, Lyu Z, Ralahy B, Liu J, Roussel T, Ding L, Tang J, Kosta A, Giorgio S, Tomasini R, Liang XJ, Dusetti N, Iovanna J, Peng L. Dendrimer nanosystems for adaptive tumor-assisted drug delivery via extracellular vesicle hijacking. Proc Natl Acad Sci U S A. 2023 Feb 14 ;120(7):e2215308120. doi : 10.1073/pnas.2215308120. Epub 2023 Feb 6. PMID : 36745793.

Martins CS, Taveneau C, Castro-Linares G, Baibakov M, Buzhinsky N, Eroles M, Milanović V, Omi S, Pedelacq JD, Iv F, Bouillard L, Llewellyn A, Gomes M, Belhabib M, Kuzmić M, Verdier-Pinard P, Lee S, Badache A, Kumar S, Chandre C, Brasselet S, Rico F, Rossier O, Koenderink GH, Wenger J, Cabantous S, Mavrakis M. Human septins organize as octamer-based filaments and mediate actin-membrane anchoring in cells.
J Cell Biol. 2023 Mar 6 ;222(3):e202203016. doi : 10.1083/jcb.202203016.

2022

Man HM, Mazurenko I, Le Guenno H, Bouffier L, Lojou E, de Poulpiquet A. Local pH Modulation during Electro-Enzymatic O2 Reduction : Characterization of the Influence of Ionic Strength by In Situ Fluorescence Microscopy. Anal Chem. 2022 Nov 15 ;94(45):15604-15612. doi : 10.1021/acs.analchem.2c02135. Epub 2022 Oct 31. PMID : 36315456.

Sarrazin M, Martin BP, Avellan R, Gnawali GR, Poncin I, Le Guenno H, Spilling CD, Cavalier JF, Canaan S. Synthesis and Biological Characterization of Fluorescent Cyclipostins and Cyclophostin Analogues : New Insights for the Diagnosis of Mycobacterial-Related Diseases. ACS Infect Dis. 2022 Dec 9 ;8(12):2564-2578. doi : 10.1021/acsinfecdis.2c00448. Epub 2022 Nov 15. PMID : 36379042.

Gendre J, Ansaldi M, Olivenza DR, Denis Y, Casadesús J, Ginet N. Genetic Mining of Newly Isolated Salmophages for Phage Therapy.
Int J Mol Sci. 2022 ;23(16):8917. Published 2022 Aug 10. doi:10.3390/ijms23168917
->https://doi-org.insb.bib.cnrs.fr/10.3390/ijms23168917

Xue S, Mercier R, Guiseppi A, Kosta A, De Cegli R, Gagnot S, Mignot T, Mauriello EMF. The differential expression of PilY1 proteins by the HsfBA phosphorelay allows twitching motility in the absence of exopolysaccharides. PLoS Genet. 2022 Apr 29 ;18(4):e1010188. doi : 10.1371/journal.pgen.1010188.

Vincent MS, Comas Hervada C, Sebban-Kreuzer C, Le Guenno H, Chabalier M, Kosta A, Guerlesquin F, Mignot T, McBride MJ, Cascales E, Doan T. Dynamic proton-dependent motors power type IX secretion and gliding motility in Flavobacterium.
PLoS Biol. 2022 Mar 25 ;20(3):e3001443. doi : 10.1371/journal.pbio.3001443.

Villalta A, Schmitt A, Estrozi LF, Quemin ERJ, Alempic JM, Lartigue A, Pražák V, Belmudes L, Vasishtan D, Colmant AMG, Honoré FA, Couté Y, Grünewald K, Abergel C. The giant mimivirus 1.2 Mb genome is elegantly organized into a 30-nm diameter helical protein shield.
Elife. 2022 Jul 28 ;11:e77607. doi : 10.7554/eLife.77607. PMID : 35900198 ; PMCID : PMC9512402.

Anna Notaro, Olivier Poirot, Elsa D Garcin, Sebastien Nin, Antonio Molinaro, Michela Tonetti, Cristina De Castro, Chantal Abergel, Giant viruses of the Megavirinae subfamily possess biosynthetic pathways to produce rare bacterial-like sugars in a clade-specific manner, microLife, Volume 3, 2022, uqac002, https://doi.org/10.1093/femsml/uqac002

2021

Notaro A, Couté Y, Belmudes L, Laugeri ME, Salis A, Damonte G, Molinaro A, Tonetti MG, Abergel C, De Castro C. Expanding the Occurrence of Polysaccharides to the Viral World : The Case of Mimivirus.
Angew Chem Int Ed Engl. 2021 Sep 1 ;60(36):19897-19904. doi : 10.1002/anie.202106671. Epub 2021 Aug 3. PMID : 34241943 ; PMCID : PMC8456856.

Jurėnas D, Rosa LT, Rey M, Chamot-Rooke J, Fronzes R, Cascales E. Mounting, structure and autocleavage of a type VI secretion-associated Rhs polymorphic toxin.
Nat Commun. 2021 Dec 1 ;12(1):6998. doi : 10.1038/s41467-021-27388-0. PMID : 34853317 ; PMCID : PMC8636562.

Ranava D, Backes C, Karthikeyan G, Ouari O, Soric A, Guiral M, Cárdenas ML, Giudici-Orticoni MT. Metabolic Exchange and Energetic Coupling between Nutritionally Stressed Bacterial Species : Role of Quorum-Sensing Molecules. mBio. 2021 Jan 19 ;12(1):e02758-20. doi : 10.1128/mBio.02758-20. PMID : 33468690.

Avilan L, Lebrun R, Puppo C, Citerne S, Cuiné S, Li-Beisson Y, Menand B, Field B, Gontero B. ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum tricornutum.
New Phytol. 2021 May ;230(4):1517-1532. doi : 10.1111/nph.17286. Epub 2021 Mar 19. PMID : 33595847 ; PMCID : PMC8252717.

2020

Mercier R, Bautista S, Delannoy M, Gibert M, Guiseppi A, Herrou J, Mauriello EMF, Mignot T. The polar Ras-like GTPase MglA activates type IV pilus via SgmX to enable twitching motility in Myxococcus xanthus.
Proc Natl Acad Sci U S A. 2020 Nov 10 ;117(45):28366-28373. doi : 10.1073/pnas.2002783117. Epub 2020 Oct 22. PMID : 33093210.

Flaugnatti N, Rapisarda C, Rey M, et al. Structural basis for loading and inhibition of a bacterial T6SS phospholipase effector by the VgrG spike.
EMBO J. 2020 ;39(11):e104129. doi:10.15252/embj.2019104129

Hitaishi VP, Mazurenko I, Vengasseril Murali A, de Poulpiquet A, Coustillier G, Delaporte P, Lojou E. Nanosecond Laser-Fabricated Monolayer of Gold Nanoparticles on ITO for Bioelectrocatalysis.
Front Chem. 2020 Jun 4 ;8:431. doi : 10.3389/fchem.2020.00431. PMID : 32582633 ; PMCID : PMC7287402.

Olivenza DR, Casadesús J, Ansaldi M. Epigenetic biosensors for bacteriophage detection and phage receptor discrimination.
Environ Microbiol. 2020 Aug ;22(8):3126-3142. doi : 10.1111/1462-2920.15050. Epub 2020 Jun 1. PMID : 32363756 ; PMCID : PMC7496735.

Jeudy S, Bertaux L, Alempic JM, et al. Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world.
ISME J. 2020 ;14(3):727-739. doi:10.1038/s41396-019-0565-y

Zhang WJ, Wu LF. Flagella and Swimming Behavior of Marine Magnetotactic Bacteria.
Biomolecules. 2020 ;10(3):460. Published 2020 Mar 16. doi:10.3390/biom10030460

Bouteiller M, Gallique M, Bourigault Y, Kosta A, Hardouin J, Massier S, Konto-Ghiorghi Y, Barbey C, Latour X, Chane A, Feuilloley M, Merieau A.
Crosstalk between the Type VI Secretion System and the Expression of Class IV Flagellar Genes in the Pseudomonas fluorescens MFE01 Strain.
Microorganisms. 2020 Apr 25 ;8(5):622. doi : 10.3390/microorganisms8050622. PMID : 32344878 ; PMCID : PMC7286023.

Tassy B, Dauphin AL, Man HM, Le Guenno H, Lojou E, Bouffier L, de Poulpiquet A.
In Situ Fluorescence Tomography Enables a 3D Mapping of Enzymatic O2 Reduction at the Electrochemical Interface.
Anal Chem. 2020 May 19 ;92(10):7249-7256. doi : 10.1021/acs.analchem.0c00844. Epub 2020 Apr 29. PMID : 32298094.

Crepin A, Kučerová Z, Kosta A, Durand E, Caffarri S.
Isolation and characterization of a large photosystem I-light-harvesting complex II supercomplex with an additional Lhca1-a4 dimer in Arabidopsis.
Plant J. 2020 Apr ;102(2):398-409. doi : 10.1111/tpj.14634. Epub 2020 Jan 8. PMID : 31811681.

Qian XX, Santini CL, Kosta A, Menguy N, Le Guenno H, Zhang W, Li J, Chen YR, Liu J, Alberto F, Espinosa L, Xiao T, Wu LF.
Juxtaposed membranes underpin cellular adhesion and display unilateral cell division of multicellular magnetotactic prokaryotes.
Environ Microbiol. 2020 Apr ;22(4):1481-1494. Doi : 10.1111/1462-2920.14710. Epub 2019 Jul 8. PMID : 31187926.

2019

Schoeffler M, Gaudin AL, Ramel F, Valette O, Denis Y, Hania WB, Hirschler-Réa A, Dolla A. Growth of an anaerobic sulfate-reducing bacterium sustained by oxygen respiratory energy conservation after O2 -driven experimental evolution.
Environ Microbiol. 2019 Jan ;21(1):360-373. doi : 10.1111/1462-2920.14466. Epub 2018 Dec 3. PMID : 30394641.

Santucci P, Smichi N, Diomandé S, Poncin I, Point V, Gaussier H, Cavalier JF, Kremer L, Canaan S. Dissecting the membrane lipid binding properties and lipase activity of Mycobacterium tuberculosis LipY domains.
FEBS J. 2019 Aug ;286(16):3164-3181. doi : 10.1111/febs.14864. Epub 2019 May 16. PMID : 31034693.

Santucci P, Johansen MD, Point V, et al. Nitrogen deprivation induces triacylglycerol accumulation, drug tolerance and hypervirulence in mycobacteria.
Sci Rep. 2019 ;9(1):8667. Published 2019 Jun 17. doi:10.1038/s41598-019-45164-5

Jensen EL, Clement R, Kosta A, Maberly SC, Gontero B.
A new widespread subclass of carbonic anhydrase in marine phytoplankton.
ISME J. 2019 Aug ;13(8):2094-2106. doi : 10.1038/s41396-019-0426-8. Epub 2019 Apr 25. PMID :
31024153 ; PMCID : PMC6776030.

Jeudy S, Bertaux L, Alempic JM, Lartigue A, Legendre M, Belmudes L, Santini S, Philippe N, Beucher L, Biondi EG, Juul S, Turner DJ, Couté Y, Claverie JM, Abergel C. Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world. ISME J. 2020 Mar ;14(3):727-739. doi : 10.1038/s41396-019-0565-y. Epub 2019 Dec 10. PMID : 31822788 ; PMCID : PMC7031253.

2018

Santucci P, Diomandé S, Poncin I, Alibaud L, Viljoen A, Kremer L, de Chastellier C, Canaan S. Delineating the Physiological Roles of the PE and Catalytic Domains of LipY in Lipid Consumption in Mycobacterium-Infected Foamy Macrophages.
Infect Immun. 2018 Aug 22 ;86(9):e00394-18. doi : 10.1128/IAI.00394-18. PMID : 29986895 ; PMCID : PMC6105901.

Cherrak Y, Rapisarda C, Pellarin R, et al. Biogenesis and structure of a type VI secretion baseplate.
Nat Microbiol. 2018 ;3(12):1404-1416. doi:10.1038/s41564-018-0260-1

Santin YG, Doan T, Lebrun R, Espinosa L, Journet L, Cascales E. In vivo TssA proximity labelling during type VI secretion biogenesis reveals TagA as a protein that stops and holds the sheath.
Nat Microbiol. 2018 ;3(11):1304-1313. doi:10.1038/s41564-018-0234-3

Sulzenbacher G, Roig-Zamboni V, Lebrun R, Guérardel Y, Murat D, Mansuelle P, Yamakawa N, Qian XX, Vincentelli R, Bourne Y, Wu LF, Alberto F. Glycosylate and move ! The glycosyltransferase Maf is involved in bacterial flagella formation.
Environ Microbiol. 2018 Jan ;20(1):228-240. doi : 10.1111/1462-2920.13975. Epub 2017 Dec 4. PMID : 29076618.

Santucci P, Diomandé S, Poncin I, et al. Delineating the Physiological Roles of the PE and Catalytic Domains of LipY in Lipid Consumption in Mycobacterium-Infected Foamy Macrophages.
Infect Immun. 2018 ;86(9):e00394-18. Published 2018 Aug 22. doi:10.1128/IAI.00394-18

Kojadinovic-Sirinelli M, Villain A, Puppo C, et al. Exploring the microbiome of the "star" freshwater diatom Asterionella formosa in a laboratory context. Environ Microbiol. 2018 ;20(10):3601-3615. doi:10.1111/1462-2920.14337

I. Mazurenko, R. Clément, D. Byrne-Kodjabachian, A. de Poulpiquet, S. Tsujimura, E. Lojou,
Pore size effect of MgO-templated carbon on enzymatic H2 oxidation by the hyperthermophilic hydrogenase from Aquifex aeolicus.
Journal of Electroanalytical Chemistry, Volume 812, 2018, Pages 221-226, ISSN 1572-6657, https://doi.org/10.1016/j.jelechem.2017.12.041.

2017

Laura Prioretti, Luisana Avilan, Frédéric Carrière, Marie-Hélène Montané, Ben Field, Gérald Grégori, Benoît Menand, Brigitte Gontero. The inhibition of TOR in the model diatom Phaeodactylum tricornutum promotes a get-fat growth regime,. Algal Research, Volume 26, 2017, Pages 265-274, ISSN 2211-9264. doi : 0.1016/j.algal.2017.08.009.

Fabre E, Jeudy S, Santini S, et al. Noumeavirus replication relies on a transient remote control of the host nucleus. Nat Commun. 2017 ;8:15087. Published 2017 Apr 21. doi:10.1038/ncomms15087

Franche N, Vinay M, Ansaldi M. Substrate-independent luminescent phage-based biosensor to specifically detect enteric bacteria such as E. coli. Environ Sci Pollut Res Int. 2017 ;24(1):42-51. doi:10.1007/s11356-016-6288-y

Ievgen Mazurenko, Karen Monsalve, Pascale Infossi, Marie-Thérèse Giudici-Orticoni, Frédéric Topin, Nicolas Manoc and Elisabeth Lojou. Impact of substrate diffusion and enzyme distribution in 3D-porous electrodes : a combined electrochemical and modelling study of a thermostable H2/O2 enzymatic fuel cell. Energy Environ. Sci., 2017,10, 1966-1982. https://doi-org.insb.bib.cnrs.fr/10.1039/C7EE01830D

Douzi B, Trinh NTT, Michel-Souzy S, Desmyter A, Ball G, Barbier P, Kosta A, Durand E, Forest KT, Cambillau C, Roussel A, Voulhoux R.
Unraveling the Self- Assembly of the Pseudomonas aeruginosa XcpQ Secretin Periplasmic Domain Provides New Molecular Insights into Type II Secretion System Secreton Architecture and Dynamics. mBio. 2017 Oct 17 ;8(5):e01185-17. Doi : 10.1128/mBio.01185-17. PMID : 29042493 ; PMCID : PMC5646246.

2016

Celia H, Noinaj N, Zakharov SD, et al. Structural insight into the role of the Ton complex in energy transduction. Nature. 2016 ;538(7623):60-65. doi:10.1038/nature19757

van Lis R, Popek M, Couté Y, Kosta A, Drapier D, Nitschke W, Atteia A.
Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia.
J Biol Chem. 2017 Feb 10 ;292(6):2395-2410. doi : 10.1074/jbc.M116.766048. Epub 2016 Dec
22. PMID : 28007962 ; PMCID : PMC5313109.

Boughanemi S, Lyonnet J, Infossi P, Bauzan M, Kosta A, Lignon S, Giudici- Orticoni MT, Guiral M. 
Microbial oxidative sulfur metabolism : biochemical evidence of the membrane-bound heterodisulfide reductase-like complex of the bacterium Aquifex aeolicus.
FEMS Microbiol Lett. 2016 Aug ;363(15):fnw156. Doi : 10.1093/femsle/fnw156. Epub 2016 Jun 8. PMID : 27284018.

2015

Benomar S, Ranava D, Cárdenas ML, et al. Nutritional stress induces exchange of cell material and energetic coupling between bacterial species. Nat Commun. 2015 ;6:6283. Published 2015 Feb 23. doi:10.1038/ncomms7283

Abergel C, Legendre M, Claverie JM. The rapidly expanding universe of giant viruses : Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol Rev. 2015 ;39(6):779-796. doi:10.1093/femsre/fuv037

Legendre M, Lartigue A, Bertaux L, et al. In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc Natl Acad Sci U S A. 2015 ;112(38):E5327-E5335. doi:10.1073/pnas.1510795112

2014

Doutre G, Philippe N, Abergel C, Claverie JM. Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness. J Virol. 2014 ;88(24):14340-14349. doi:10.1128/JVI.02414-14

Legendre M, Bartoli J, Shmakova L, et al. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A. 2014 ;111(11):4274-4279. doi:10.1073/pnas.1320670111

2013

Santini S, Jeudy S, Bartoli J, et al. Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A. 2013 ;110(26):10800-10805. doi:10.1073/pnas.1303251110

Philippe N, Legendre M, Doutre G, et al. Pandoraviruses : amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes [published correction appears in Science. 2013 Sep 27 ;341(6153):1452]. Science. 2013 ;341(6143):281-286. doi:10.1126/science.1239181

2012
Aussignargues C, Giuliani MC, Infossi P, et al. Rhodanese functions as sulfur supplier for key enzymes in sulfur energy metabolism. J Biol Chem. 2012 ;287(24):19936-19948. doi:10.1074/jbc.M111.324863

Guiral M, Prunetti L, Aussignargues C, et al. The hyperthermophilic bacterium Aquifex aeolicus : from respiratory pathways to extremely resistant enzymes and biotechnological applications. Adv Microb Physiol. 2012 ;61:125-194. doi:10.1016/B978-0-12-394423-8.00004-4


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